Flush-methods {FLUSH} | R Documentation |
Perform filetring algorithm on an object of class exprSet or matrix, returning a subsetted object.
## S4 method for signature 'matrix': Flush(object, RA, check = TRUE, ...) ## S4 method for signature 'ExpressionSet': Flush(object, RA, check = TRUE, onlyExprs = TRUE, which = 1)
object |
An object of class exprSet or matrix |
RA |
An object of class RA as from fitRA and then FlushSet |
check |
logical. If TRUE some additional check on probes name consistency are performed. |
onlyExprs |
logical. If TRUE returns an object of class ExpressionSet with the selected features. If FALSE an object of class FLUSH is returned with the RA object included (for plotting) |
which |
|
... |
additional arguments.Not used. |
An object of class FLUSH
Stefano Calza <calza@med.unibs.it>
Stefano Calza, Wolfgang Raffelsberger, Alexander Ploner, Jose Sahel, Thierry Leveillard and Yudi Pawitan. Filtering genes to improve sensitivity in oligonucleotide microarray data analysis - 2007 Submitted
## Not run: data(choe.MAS5) data(choe) choe.RA <- fitRA(choe) choe.fSet <- FlushSet(choe.RA) choe.Flush <- Flush(choe.MAS5,choe.fSet, onlyExprs = FALSE) ## End(Not run)