{"id":23,"date":"2014-10-08T11:51:08","date_gmt":"2014-10-08T11:51:08","guid":{"rendered":"https:\/\/jira-test.meb.ki.se\/wpsites\/aleplo\/?page_id=23"},"modified":"2020-04-06T13:17:59","modified_gmt":"2020-04-06T13:17:59","slug":"software","status":"publish","type":"page","link":"https:\/\/www.meb.ki.se\/sites\/aleplo\/software\/","title":{"rendered":"Software"},"content":{"rendered":"

All packages are based on the free & powerful statistical environment R<\/span><\/a>. Heatplus, maCorrPlot, and OCplus have also been submitted to BioConductor<\/span><\/a>, which always contains the latest versions.<\/p>\n

\n

Heatplus<\/h3>\n

Visualization of microarray expression data with some extras that are not available in the basic R version, viz. adding a legend and adding extra sample information.<\/p>\n\n\n\n\n\n
Source<\/th>\nHeatplus_1.0.0.tar.gz<\/span><\/a><\/td>\n<\/tr>\n
Windows binary<\/th>\nHeatplus_1.0.0.zip<\/span><\/a><\/td>\n<\/tr>\n
Documentation<\/th>\nHeatplus.pdf<\/span><\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n
\n

maCorrPlot<\/h3>\n

Graphically displays correlation in microarray data that is due to insufficient normalization as described in PMID 15799785<\/span><\/a>.<\/p>\n\n\n\n\n\n
Source<\/th>\nmaCorrPlot_1.0.1.tar.gz<\/span><\/a><\/td>\n<\/tr>\n
Windows binary<\/th>\nmaCorrPlot_1.0.1.zip<\/span><\/a><\/td>\n<\/tr>\n
Documentation<\/th>\nmaCorrPlot.pdf<\/span><\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n
\n

OCplus<\/h3>\n

This package allows to characterize the operating characeristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).<\/p>\n\n\n\n\n\n
Source<\/th>\nOCplus_1.3.5.tar.gz<\/span><\/a><\/td>\n<\/tr>\n
Windows binary<\/th>\nOCplus_1.3.5.zip<\/span><\/a><\/td>\n<\/tr>\n
Documentation<\/th>\nOCplus.pdf<\/span><\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

All packages are based on the free & powerful statistical environment R. Heatplus, maCorrPlot, and OCplus have also been submitted to BioConductor, which always contains the latest versions. Heatplus Visualization of microarray expression data with some extras that are not available in the basic R version, viz. adding a legend and adding extra sample information. […]<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-23","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/pages\/23","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/comments?post=23"}],"version-history":[{"count":4,"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/pages\/23\/revisions"}],"predecessor-version":[{"id":76,"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/pages\/23\/revisions\/76"}],"wp:attachment":[{"href":"https:\/\/www.meb.ki.se\/sites\/aleplo\/wp-json\/wp\/v2\/media?parent=23"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}