Alexander Ploner - Publications

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Detecting differential expression in microarray data: comparison of optimal procedures.

Perelman, E.; Ploner, A.; Calza, S. & Pawitan, Y.

BMC Bioinformatics

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Vol. 8

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pp. 28

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2007

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Gene expression in 16q is associated with survival and differs between Sørlie breast cancer subtypes.

Wennmalm, K.; Calza, S.; Ploner, A.; Hall, P.; Bjöhle, J.; Klaar, S.; Smeds, J.; Pawitan, Y. & Bergh, J.

Genes Chromosomes Cancer

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Vol. 46

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pp. 87-97

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2007

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Annotated regions of significance of SELDI-TOF-MS spectra for detecting protein biomarkers.

Tan, C.S.; Ploner, A.; Quandt, A.; Lehtiö, J.; Pernemalm, M.; Lewensohn, R. & Pawitan, Y.

Proteomics

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Vol. 6

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pp. 6124-6133

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2006

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Estimation of false discovery proportion under general dependence.

Pawitan, Y.; Calza, S. & Ploner, A.

Bioinformatics

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Vol. 22

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pp. 3025-3031

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2006

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Genomic instability and prognosis in breast carcinomas.

Kronenwett, U.; Ploner, A.; Zetterberg, A.; Bergh, J.; Hall, P.; Auer, G. & Pawitan, Y.

Cancer Epidemiol Biomarkers Prev

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Vol. 15

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pp. 1630-1635

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2006

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Intrinsic molecular signature of breast cancer in a population-based cohort of 412 patients.

Calza, S.; Hall, P.; Auer, G.; Bjöhle, J.; Klaar, S.; Kronenwett, U.; Liu, E.; Miller, L.; Ploner, A.; Smeds, J.; Bergh, J. & Pawitan, Y.

Breast Cancer Res

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Vol. 8

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pp. R34

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2006

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Hormone-replacement therapy influences gene expression profiles and is associated with breast-cancer prognosis: a cohort study.

Hall, P.; Ploner, A.; Bjöhle, J.; Huang, F.; Lin, C.; Liu, E.; Miller, L.; Pawitan, Y.; Shaw, P.; Skoog, L.; Smeds, J.; Wedren, S.; Öhd, J. & Bergh, J.

BMC Medicine

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Vol. 4

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pp. 16

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2006

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Finding regions of significance in SELDI measurements for identifying protein biomarkers.

Tan, C.S.; Ploner, A.; Quandt, A.; Lehtiö, J. & Pawitan, Y.

Bioinformatics

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Vol. 22

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pp. 1515-1523

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2006

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Multidimensional local false discovery rate for microarray studies.

Ploner, A.; Calza, S.; Gusnanto, A. & Pawitan, Y.

Bioinformatics

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Vol. 22

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pp. 556-565

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2006

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Fold-Change Estimation of Differentially Expressed Genes using Mixture Mixed-Model

Gusnanto, A.; Ploner, A. & Pawitan, Y.

Statistical Applications in Genetics and Molecular Biology

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Vol. 4

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pp. Article 26

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2005

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An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival

Miller, L.D.; Smeds, J.; George, J.; Vega, V.B.; Vergara, L.; Ploner, A.; Pawitan, Y.; Hall, P.; Klaar, S.; Liu, E.T. & Bergh, J.

PNAS

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Vol. 102

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pp. 13550-5

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2005

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Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts.

Pawitan, Y.; Bjöhle, J.; Amler, L.; Borg, A.; Egyhazi, S.; Hall, P.; Han, X.; Holmberg, L.; Huang, F.; Klaar, S.; Liu, E.; Miller, L.; Nordgren, H.; Ploner, A.; Sandelin, K.; Shaw, P.; Smeds, J.; Skoog, L.; Wedren, S. & Bergh, J.

Breast Cancer Res

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Vol. 7

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pp. R953-R964

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2005

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Bias in the estimation of false discovery rate in microarray studies.

Pawitan, Y.; Murthy, K.R.K.; Michiels, S. & Ploner, A.

Bioinformatics

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Vol. 21

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pp. 3865-3872

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2005

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Gene profile and response to treatment.

Smeds, J.; Miller, L.D.; Bjöhle, J.; Hall, P.; Klaar, S.; Liu, E.T.; Pawitan, Y.; Ploner, A. & Bergh, J.

Ann Oncol

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Vol. 16 Suppl 2

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pp. ii195-202

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2005

False discovery rate, sensitivity and sample size for microarray studies

Pawitan, Y.; Michiels, S.; Koscielny, S.; Gusnanto, A. & Ploner, A.

Bioinformatics

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Vol. 21

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pp. 3017-24

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2005

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Correlation test to assess low-level processing of high-density oligonucleotide microarray data.

Ploner, A.; Miller, L.; Hall, P.; Bergh, J. & Pawitan, Y.

BMC Bioinformatics

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Vol. 6

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pp. 80

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2005

Modeling Visitor Attendance Levels Subject to Day of the Week and Weather: A Comparison between Linear Regression Models and Regression Trees

Ploner, A. & Brandenburg, C.

J. Nature Conservation

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Vol. 11

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pp. 297-308

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2004

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Fish drift in a Danube sidearm-system: I. Site-, inter- and intraspecific patterns

Zitek, A.; Schmutz, S.; Unfer, G. & Ploner, A.

Journal of Fish Biology

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Vol. 65

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pp. 1319-1338

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2004

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Fish drift in a Danube sidearm-system: II. Seasonal and diurnal patterns

Zitek, A.; Schmutz, S. & Ploner, A.

Journal of Fish Biology

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Vol. 65

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pp. 1339-1357

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2004

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Moberg picking-up test in patients with inflammatory joint diseases: a survey of suitability in comparison with button test and measures of disease activity.

Stamm, T.A.; Ploner, A.; Machold, K.P. & Smolen, J.

Arthritis Rheum

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Vol. 49

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pp. 626-32

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2003

Results of three long-term P-field experiments in Austria -- 1st Report: Effects of different types and quantities of P-fertiliser on yields and PCAL/DL-contents in soil (in German)

Spiegel, H.; Lindenthal, T.; Mazorek, M.; Ploner, A.; Freyer, B. & Köchl, A.

Bodenkultur, Austrian J. Agric. Res.

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Vol. 52

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pp. 3-15

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2001

New Directions in Geostatistics

Ploner, A. & Dutter, R.

J. Stat. Plan. Inf.

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Vol. 91

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pp. 499-509

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2000

The Use of the Variogram Cloud in Geostatistical Modeling

Ploner, A.

Environmetrics

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Vol. 10

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pp. 413-437

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1999